All Projects To Do List
This post lists all my ongoing projects and to-do list.
Mcap 2020
In post revision review!
Hawaii 2023
Analysis and writing
- Process all samples for larval symbiont cell density in the lab at UW
- Revise analysis of rapid light curves from phenoplate data and send results to UTS collaborators
- Analyze larval size and symbiont cell density data
- Finalize RNAseq differential gene expression and functional enrichment analyses
- Finalize ITS2 analysis
- Revise lipidomic analyses for differential lipids and SAM modeling methods
- Finalize metabolomics analysis
- Conduct WGCNA correlation analyses between lipidomic and RNAseq datasets across temperature, parental phenotypes, and ITS2
- Conduct WGCNA correlation analyses of lipid and RNAseq datasets across parental phenotypes, symbiont cell density, phenoplate metrics, and ITS2
- Storyboard manuscript with collaborators
- Finalize methods section
Moorea 2023
Data collection and analysis
- Process/submit samples for RNAseq
- Process/submit samples for Metabolomics
- Update methods section
- ITS2 sequencing analysis
E5 Physiology
Final manuscript
- Finish writing discussion section
- Send draft of full manuscript to coauthors
- Revise manuscript and post on bioRxiv
- Submit manuscript
E5 Molecular
Data analysis
- Examine neural networks and SEM modeling for time series multiomic modeling analyses
- Analyze lipid data
- Analyze metabolite data
- Multiomic WGCNA analyses
- Machine learning multiomic prediction analyses
E5 Nom Nom
Data analysis
- Analyze PR rates data set
Resazurin methods manuscript
Analysis and writing
- Analyze USDA families resazurin response
- Include: 10K seed, PolyIC seed, USDA families
- Reach out for oxygen validation data with Louis at USDA
- Introduction
- Methods
- Results
- Discussion
Oyster 2024 Stress Hardening
Data collection and analysis
- Goose Point
- Measure size of December 2024 oysters from images (Noah K. in progress) and analyze
- Point Whitney
- Conduct spring assessment of Efforts siblings outplanted at Point Whitney
- Goose Point
- Conduct spring assessment of Efforts oysters outplanted
- Baywater
- Conduct spring assessment of 10K oysters outplanted
- Westcott
- Conduct spring assessment of Efforts oysters outplanted
Oyster Lifestage Carry Over
Analysis and writing
- Analyze next set of qPCR
- Storyboard manuscript
- Analyze final time point growth data
- Organize GitHub repository
- Introduction
- Methods
- Results
- Discussion
10K Seed
Data collection and analysis
- Conduct spring growth and survival of outplants at Baywater shellfish
- Pending outplant data, storyboard potential manuscripts or additional analyses
PolyIC Larvae
Data collection and experiments
- Conduct survival testing in the lab (Madeline)
- Measure size from December, January, February images for growth (Madeline)
- RNA extractions and RNAseq analyses
Oyster 2025 Stress Hardening
Planning
- Design spring-summer oyster stress hardening projects to include heat and aerial exposure treatments
- Ask Neil about timeline on sending new seed
Planning and funding
- Talk with the Coral Resilience Lab about upcoming work and potential projects
- Work on grant applications with Steven and Hollie
- Perspectives manuscript with Yaamini
Outreach and education
- Create and publish Reva Atea spring issue of communications magazine
Written on March 20, 2025