All Projects To Do List

This post lists all my ongoing projects and to-do list.

Mcap 2020

In post revision review!

Hawaii 2023

Analysis and writing

  • Process all samples for larval symbiont cell density in the lab at UW
  • Revise analysis of rapid light curves from phenoplate data and send results to UTS collaborators
  • Analyze larval size and symbiont cell density data
  • Finalize RNAseq differential gene expression and functional enrichment analyses
  • Finalize ITS2 analysis
  • Revise lipidomic analyses for differential lipids and SAM modeling methods
  • Finalize metabolomics analysis
  • Conduct WGCNA correlation analyses between lipidomic and RNAseq datasets across temperature, parental phenotypes, and ITS2
  • Conduct WGCNA correlation analyses of lipid and RNAseq datasets across parental phenotypes, symbiont cell density, phenoplate metrics, and ITS2
  • Storyboard manuscript with collaborators
  • Finalize methods section

Moorea 2023

Data collection and analysis

  • Process/submit samples for RNAseq
  • Process/submit samples for Metabolomics
  • Update methods section
  • ITS2 sequencing analysis

E5 Physiology

Final manuscript

  • Finish writing discussion section
  • Send draft of full manuscript to coauthors
  • Revise manuscript and post on bioRxiv
  • Submit manuscript

E5 Molecular

Data analysis

  • Examine neural networks and SEM modeling for time series multiomic modeling analyses
  • Analyze lipid data
  • Analyze metabolite data
  • Multiomic WGCNA analyses
  • Machine learning multiomic prediction analyses

E5 Nom Nom

Data analysis

  • Analyze PR rates data set

Resazurin methods manuscript

Analysis and writing

  • Analyze USDA families resazurin response
  • Include: 10K seed, PolyIC seed, USDA families
  • Reach out for oxygen validation data with Louis at USDA
  • Introduction
  • Methods
  • Results
  • Discussion

Oyster 2024 Stress Hardening

Data collection and analysis

  • Goose Point
    • Measure size of December 2024 oysters from images (Noah K. in progress) and analyze
  • Point Whitney
    • Conduct spring assessment of Efforts siblings outplanted at Point Whitney
  • Goose Point
    • Conduct spring assessment of Efforts oysters outplanted
  • Baywater
    • Conduct spring assessment of 10K oysters outplanted
  • Westcott
    • Conduct spring assessment of Efforts oysters outplanted

Oyster Lifestage Carry Over

Analysis and writing

  • Analyze next set of qPCR
  • Storyboard manuscript
  • Analyze final time point growth data
  • Organize GitHub repository
  • Introduction
  • Methods
  • Results
  • Discussion

10K Seed

Data collection and analysis

  • Conduct spring growth and survival of outplants at Baywater shellfish
  • Pending outplant data, storyboard potential manuscripts or additional analyses

PolyIC Larvae

Data collection and experiments

  • Conduct survival testing in the lab (Madeline)
  • Measure size from December, January, February images for growth (Madeline)
  • RNA extractions and RNAseq analyses

Oyster 2025 Stress Hardening

Planning

  • Design spring-summer oyster stress hardening projects to include heat and aerial exposure treatments
  • Ask Neil about timeline on sending new seed

Planning and funding

  • Talk with the Coral Resilience Lab about upcoming work and potential projects
  • Work on grant applications with Steven and Hollie
  • Perspectives manuscript with Yaamini

Outreach and education

  • Create and publish Reva Atea spring issue of communications magazine
Written on March 20, 2025