All Projects To Do List

This post lists all my ongoing projects and to-do list.

Hawaii 2023

Analysis and writing

  • Revise analysis of rapid light curves from phenoplate data and send results to UTS collaborators
  • Finalize RNAseq differential gene expression and functional enrichment analyses
  • Revise lipidomic analyses for differential lipids and SAM modeling methods
  • Finalize metabolomics analysis
  • Conduct WGCNA correlation analyses
  • Finalize methods section

Moorea 2023

Data collection and analysis

  • Process/submit samples for Metabolomics (August 2025)
  • Update methods section
  • ITS2 sequencing analysis

E5 Physiology

Final manuscript

  • Send draft of full manuscript to coauthors (August 2025)
  • Post on bioRxiv
  • Submit manuscript

E5 Metabolism

Data analysis

  • Metabolomics and lipidomics analysis for timeseries metabolism paper

E5 Nom Nom

Data analysis

  • Analyze PR rates data set

Resazurin methods manuscript

Analysis and writing

  • Discussion
  • Final draft to coauthors in August 2025
  • Submit early September to journal

Oyster 2024 Stress Hardening

Data collection and analysis

  • Goose Point
    • Conduct August/September assessments
  • Sequim
    • Conduct August/September assessments
  • Baywater
    • Conduct fall/late summer assessment of 10K and PolyIC oysters
  • Westcott
    • Analyze August assessment images (Grace L.)

Oyster Lifestage Carry Over

Analysis and writing

  • Analyze qPCR results
  • Introduction
  • Methods
  • Results
  • Discussion

10K Seed

Data collection and analysis

  • Analyze summer growth from outplant assessment photos

PolyIC Larvae

Data collection and experiments

  • Write physiology/performance paper

Oyster 2025 Stress Hardening at Manchester

Experiment and data collection

  • Assess summer mortality and growth of Manchester experiment

Planning and funding

  • BIO-OCE submission with Hollie (September/October 2025)
  • Look at USDA funding calls
Written on August 15, 2025