All Projects To Do List

This post lists all my ongoing projects and to-do list.

Hawaii 2023

Analysis and writing

  • Finalize RNAseq differential gene expression and functional enrichment analyses
  • Conduct WGCNA correlation analyses
  • Finalize results section
  • Outline discussion main points

Moorea 2023

Data collection and analysis

  • Update methods section
  • ITS2 sequencing analysis
  • RNAseq analysis
  • Metabolomics analysis
  • ITS2 sample sequencing for POC larvae

E5 Physiology

Final manuscript

  • Revise based on coauthor comments
  • Post on bioRxiv (late Oct)
  • Submit manuscript (late Oct)

E5 Metabolism

Data analysis

  • Metabolomics and lipidomics analysis for timeseries metabolism paper

E5 Nom Nom

Data analysis

  • Analyze PR rates data set

Resazurin methods manuscript

Analysis and writing

  • Submit early November to journal
  • Revise post technical review

Oyster 2024 Stress Hardening

Data collection and analysis

  • Goose Point
    • Image analysis of Oct assessment [Noah]
  • Sequim
    • Image analysis of Oct assessment [Noah]
  • Baywater
    • Conduct Oct assessment
    • Image analysis of Oct assessment [Noah]
    • Image analysis of initial outplant images [Ariana]
  • Westcott
    • Conduct Dec assessment
    • Image analysis of Dec assessment [Grace]
  • Assemble manuscript/note of data from 10K outplant seed, PolyIC outplant seed, hardening efforts outplant seed

Manchester Hardening

Data collection

  • Winter/fall assessment (Nov?)
  • Image analysis of winter assessment

Oyster Lifestage Carry Over

Analysis and writing

  • Analyze qPCR results
  • Introduction
  • Methods
  • Results
  • Discussion

PolyIC Larvae

Data collection and experiments

  • Write physiology/performance paper

Planning and funding

  • IOS submission with Hollie (September/October 2025)
Written on October 15, 2025