This post lists all my ongoing projects and to-do list.

Hawaii 2023

Analysis and writing

• Revise analysis of rapid light curves from phenoplate data and send results to UTS collaborators
• Finalize RNAseq differential gene expression and functional enrichment analyses
• Revise lipidomic analyses for differential lipids and SAM modeling methods
• Finalize metabolomics analysis
• Conduct WGCNA correlation analyses
• Finalize methods section

Moorea 2023

Data collection and analysis

• Process/submit samples for Metabolomics (August 2025)
• Update methods section
• ITS2 sequencing analysis

E5 Physiology

Final manuscript

• Finish writing discussion section
• Send draft of full manuscript to coauthors (August 2025)
• Revise manuscript and post on bioRxiv
• Submit manuscript

E5 Metabolism

Data analysis

• Metabolomics and lipidomics analysis for timeseries metabolism paper

E5 Nom Nom

Data analysis

• Analyze PR rates data set

Resazurin methods manuscript

Analysis and writing

• Conduct oxygen experiment with Mac
• Results
• Discussion
• Final draft to coauthors in August 2025

Oyster 2024 Stress Hardening

Data collection and analysis

• Goose Point
  • Conduct August/September assessments
• Sequim
  • Conduct August/September assessments
• Baywater
  • Conduct summer assessment of 10K oysters outplanted
• Westcott
  • Analyze August assessment images (Grace L.)

Oyster Lifestage Carry Over

Analysis and writing

• Analyze qPCR results
• Organize GitHub repository
• Introduction
• Methods
• Results
• Discussion

10K Seed

Data collection and analysis

• Conduct summer growth and survival of outplants at Baywater shellfish

PolyIC Larvae

Data collection and experiments

• RNAseq analyses (UG’s)
• Lab qPCR thermal stress assays (UG’s)

Oyster 2025 Stress Hardening at Manchester

Experiment and data collection

• Assess summer mortality and growth of Manchester experiment

Planning and funding

• BIO-OCE submission with Hollie (September/October 2025)