March 2023 Goals

March goals and daily notebook entries.

Goals

Writing and manuscripts

  1. Submit Montipora capitata 2020 time series manuscript to PNAS
  2. Outline results for E5 time series manuscript
  3. E5 time series manuscript methods
  4. Write methods for 2022 Acropora Moorea manuscript

Sample processing

  1. Decide on sample processing for 2022 Acropora project and plan extractions as required

Data processing

  1. Process stable isotope metabolomics data from Rutgers after processing
  2. Prepare E5 data for Ferdi’s modeling project

Project planning

  1. Experimental design for Hawaii 2023 work
  2. Supply list for Hawaii 2023 work

Daily Log

Friday March 31, 2023

  • Meeting with Hollie
  • Meeting with Jill
  • Putnam Lab meeting
  • Mcap2021 analysis
  • E5 deep dive analysis
  • Preparing Hawaii 2023 packing list

Thursday March 30, 2023

  • Prepping RNAseq lecture
  • Field work with WDFW

Wednesday March 29, 2023

  • Meeting with Lauren
  • Hawaii 2023 supply and packing list
  • Mcap2021 metabolomics analysis and reading

Tuesday March 28, 2023

  • Meeting with Danielle
  • Analyzing Mcap2021 stable isotope metabolomics data

Monday March 27, 2023

  • Analyzing Mcap2021 stable isotope metabolomics data
  • Putnam Lab journal club
  • Roberts Lab meeting
  • E5 time series methods

Friday March 24, 2023

  • Revising E5 methods and results sections
  • E5 molecular mechanisms meeting
  • Meeting with HP: Planning project time lines and sample processing
  • Updated CV
  • Putnam Lab meeting

Thursday March 23, 2023

  • Outlining results and revising methods for E5 time series manuscript
  • Ran E5 deep dive alignment steps
  • Roberts Lab pubathon
  • Waiting for bioRxiv submission to clear to submit Mcap2020 ms

Wednesday March 22, 2023

  • Outlining results and revising methods for E5 time series manuscript
  • Troubleshooting/analyzing E5 deep dive RNA seq
  • Helped at Manchester for Larken’s project

Tuesday March 21, 2023

  • Finished new E5 plots and started outline of results section for time series project
  • TidyTuesday exercise for Roberts Lab meeting
  • E5 molecular mechanisms gene expression analysis
  • Submitted Hawaii housing reservation for summer work
  • Met with Jen Matthews for collaboration planning

Monday March 20, 2023

  • Submitted Mcap2020 manuscript to bioRxiv
  • Meetings at NOAA AFSC in Seattle

Friday March 17, 2023

  • Prepared Mcap2020 manuscript for submission
  • Putnam Lab meetings

Thursday March 16, 2023

  • E5 time series coding for plasticity analysis
  • Generating new E5 time series plasticity figures
  • Preparing files for E5 deep dive project

Wednesday March 15, 2023

  • E5 Monthly Meeting
  • Preparing files for E5 Deep Dive RNAseq count matrix
  • E5 time series coding for plasticity analysis

Tuesday March 14, 2023

  • Preparing files for E5 Deep Dive RNAseq count matrix
  • E5 time series coding for plasticity analysis
  • Writing meeting with Danielle
  • Meeting with Jill for E5 Deep Dive analysis

Monday March 13, 2023

  • Roberts Lab meeting (machine learning in genomics)
  • Reviewed Zoe’s paper
  • Revised Mcap2020 final edits
  • Mcap2021 notebook post for recent data analysis

Friday March 10, 2023

  • Putnam Lab meeting
  • E5 Mechanisms meeting
  • Mcap2020 revisions
  • Revise UW curriculum

Thursday March 9, 2023

  • Meeting with Callum @ UW
  • UW Postdoc Seminar series
  • Roberts Lab pubathon
  • Revise UW curriculum
  • Hypotheses and project planning

Wednesday March 8, 2023

  • Helped with Larken’s project at Manchester
  • Met with Rosalind at Maritime High School for curriculum development

Tuesday March 7, 2023

  • Writing meeting with Danielle
  • Meeting and planning projects with Lauren
  • Collaboration meeting with Alex
  • Fixed Mcap2020 Fig 1 photos
  • Wrote preliminary results section for Mcap2021 and finished figures from data we have in hand

Monday March 6, 2023

  • Roberts Lab meeting
  • Putnam Lab Journal Club meeting
  • Read 6 papers
  • Outlined Apul2022 hypotheses and questions for future work
  • Worked on Mcap2021 results section

Friday March 3, 2023

  • Meeting with Hollie
  • Meeting with Danielle and Terava for writing
  • Putnam Lab meeting
  • Budget planning and project time line planning
  • UW curriculum revisions

Thursday March 2, 2023

  • UW Data Science Software Carpentry workshop
  • Mcap2021 data analysis
  • Mcap2020 manuscript revisions
  • Budget planning and project time line planning

Wednesday March 1, 2023

  • UW Data Science Software Carpentry workshop
  • Mcap2021 data analysis
  • UW curriculum revisions
Written on March 1, 2023