Lab Notebook

Welcome to my open lab notebook! This is a searchable, cataloged collection of research notes and findings.

Looking for older entries?

View my legacy notebook website for previous entries prior to January 2026.

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Downsampling analysis of PolyIC qPCR data

cgigas
oyster
polyic
analysis

Downsampling analysis of PolyIC project qPCR data

2026-08-04
10 min

August Goals and Daily Entries

goals
daily-entries

August 2026 goals and daily entries

2026-08-03
1 min

Initial statistical analysis of PolyIC qPCR data

cgigas
oyster
polyic
analysis

Preliminary statistical analysis of PolyIC project qPCR data

2026-08-03
13 min

Predictive resazurin phenotyping using VIMS oyster family data

resazurin
metabolism
cvirginica

Predictive phenotyping using resazurin curve characteristics in VIMS oyster family data

2026-07-23
11 min

July Goals and Daily Entries

goals
daily-entries

July 2026 goals and daily entries

2026-07-23
2 min

Outplanting repeat priming oysters at Westcott

hardening
oyster
cgigas
wsg-usda

Outplanting oysters from repeat priming experiment at Westcott Shellfish

2026-07-20
3 min

New publications - July 2026

publications

New publications in July 2026

2026-07-20
4 min

Week 7 of seed hardening at Point Whitney

hardening
oyster
cgigas
wsg-usda

Conducting weekly hardening stress on oyster seed at Point Whitney

2026-07-15
2 min

Oyster image size analysis protocol

protocol
image
oyster

Protocol for analyzing size in field images of oyster outplants

2026-07-07
4 min

Week 6 of seed hardening at Point Whitney

hardening
oyster
cgigas
wsg-usda

Conducting weekly hardening stress on oyster seed at Point Whitney

2026-07-06
2 min

Week 5 of seed hardening at Point Whitney

hardening
oyster
cgigas
wsg-usda

Conducting weekly hardening stress on oyster seed at Point Whitney and prepping for Westcott deployment

2026-07-01
3 min

June Goals and Daily Entries

goals
daily-entries

June 2026 goals and daily entries

2026-06-30
2 min

Preparing for Westcott outplants at UW

hardening
oyster
cgigas
wsg-usda

Preparing oysters and supplies for Westcott outplanting at UW

2026-06-24
2 min

Resazurin sampling for the SORMI project

resazurin
oyster
cgigas
sormi

Resazurin sampling of SORMI families in June 2026

2026-06-24
2 min

Running log of inventory at Point Whitney

inventory
wsg-usda

Assessing inventory and updating inventory logs for Point Whitney

2026-06-23
2 min

Week 4 of seed hardening at Point Whitney

hardening
oyster
cgigas
wsg-usda

Conducting the second weekly stress on oyster seed at Point Whitney

2026-06-23
2 min

Week 2 of seed hardening at Point Whitney

hardening
oyster
cgigas
wsg-usda

Conducting the second weekly stress on oyster seed at Point Whitney

2026-06-08
2 min

Assessing oyster outplants at Baywater

hardening
oyster
cgigas
wsg-usda
growth
polyic
10K-seed

Assessing oyster outplants at Baywater

2026-06-06
13 min

Orion Star A325 Protocol

protocol
equipment

Orion Star A325 Protocol

2026-06-05
5 min

Starting a new round of seed hardening at Point Whitney - Week 1

hardening
oyster
cgigas
wsg-usda

Conducting the first weekly stress on oyster seed at Point Whitney

2026-06-04
2 min

Starting a new round of seed hardening on UW campus

hardening
oyster
cgigas
wsg-usda

Conducting the first weekly stress on oyster seed at UW

2026-06-04
2 min

Analyzing Manchester project stress test survival data

hardening
oyster
cgigas
wsg-usda
survival
manchester-hardening

Analyzing Manchester project stress test survival data

2026-06-03
4 min

Assessing oyster outplants at Sequim Bay

hardening
oyster
cgigas
wsg-usda
growth
polyic

Assessing oyster outplants at Sequim Bay

2026-05-31
2 min

Assessing oysters at Manchester for hardening project

hardening
oyster
cgigas
wsg-usda
growth
manchester-hardening

Assessing oysters at Manchester for hardening project

2026-05-28
3 min

May Goals and Daily Entries

goals
daily-entries

May 2026 goals and daily entries

2026-05-27
2 min

Assessing oyster growth at Goose Point

hardening
oyster
cgigas
wsg-usda
growth

Assessing oyster growth at Goose Point

2026-05-22
2 min

Protocol - oyster stress hardening for Westcott outplanting

protocol
hardening
oyster
cgigas
wsg-usda

Protocol for oyster stress hardening for Westcott outplanting

2026-05-18
3 min

Growth analysis of Goose Point outplants from Oct 2025

goose-point
wsg-usda
cgigas
growth
oyster

Analysis of growth from image growth calculations of Goose Point oyster outplants

2026-02-02
4 min

January Goals and Daily Entries

goals
daily-entries

January 2026 goals and daily entries

2026-01-26
2 min

Organizing and cleaning tanks in FTR for new oysters

cgigas
oyster

Preparing, cleaning, and organizing tanks in FTR and dropping off new oysters

2026-01-23
3 min

Picking up new oyster seed for UW projects

cgigas
oyster

Ordering and picking up new oyster seed for UW student projects

2026-01-21
2 min

Checking on Manchester oyster outplants

manchester-hardening
wsg-usda
cgigas
growth
oyster

Maintenance on field oyster outplants at Manchester NOAA site

2026-01-06
3 min

All Projects To Do List

goals

To do list for all ongoing projects

2026-01-01
1 min

Writing Project Status

goals
writing

Status of my writing projects and manuscripts

2026-01-01
2 min

ASCA Analysis for RNAseq and Lipidomics Datasets

larval-symbiont-2023
asca
rna-seq
lipidomics
lipids
mcapitata
molecular
multivariate

ASCA Analysis for RNAseq and Lipidomics Data for the 2023 Hawaii project

2025-12-19
25 min
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