November 2025 Goals

November 2025 goals and daily notebook entries.

Goals

Writing and manuscripts

  1. Results for Mcap2023 analysis
  2. Revise E5 paper based on coauthor feedback
  3. Submit resazurin manuscript to biorxiv and JEB
  4. USDA final report
  5. PolyIC manuscript full draft
  6. Start Moorea 2023 paper (abstract, outline methods)

Analysis

  1. RNAseq analysis for Hawaii 2023
  2. Lipid analysis for Hawaii 2023
  3. Finalize Hawaii 2023 scripts and data sets
  4. E5 time series WGCNA analyses

Field work

  1. Conduct fall/winter assessments at Westcott (Dec 2)
  2. Conduct lab survival assays of Westcott oysters

Funding

  1. Write IOS grant with HP

Lab experiments

  1. Guava Muse cell viability assay testing

Lab meeting goals

  • Goal for next lab meeting: PolyIC manuscript full draft, E5 physiology manuscript revised and submit (done!)

Daily Log

November 26

  • USDA report
  • Resazurin trials
  • Preparing for Westcott survival trials and assessment
  • SORMI meeting
  • Tank nutrient check and feeding

November 25

  • USDA report
  • PolyIC manuscript
  • Metabolomics working session and ASCA analysis
  • Resazurin meeting
  • Bioinformatics with Lucy

November 24

  • Planning Westcott survival testing
  • PolyIC manuscript
  • USDA reporting

November 21

  • E5 paper meetings
  • Submitted E5 phys paper

November 20

  • Meeting with Steven
  • Barnacle working meeting
  • Meeting with undergrads
  • E5 phys paper
  • PolyIC paper
  • USDA report

November 19

  • E5 phys paper
  • ASCA analysis
  • Meeting with Lucy
  • Oyster project planning
  • USDA report
  • Resazurin training

November 18

  • E5 phys paper
  • ASCA analysis
  • Barnacle paper
  • Metabolomics writing group

November 17

  • E5 phys paper
  • Oyster growth analysis

November 14

  • E5 phys paper
  • E5 timeseries molecular meeting

November 13

  • eScience meeting
  • Meeting with Grace
  • E5 phys paper
  • PolyIC paper
  • Westcott trip planning

November 12

  • USDA reporting
  • Meeting with Lucy
  • Barnacle working meeting
  • Oyster assessment trip planning and reimbursements
  • PolyIC paper

November 4

  • Resazurin paper bioRxiv submission
  • PolyIC paper
  • E5 physiology paper
  • Field work at Baywater

November 3

  • Resazurin paper bioRxiv submission
  • Lab meeting
  • Meeting with Hollie
  • E5 physiology manuscript
Written on November 26, 2025