October 2025 goals and daily notebook entries.

Goals

Writing and manuscripts

1. Results for Mcap2023 analysis
2. Revise E5 paper based on coauthor feedback
3. Revise resazurin paper
4. Submit resazurin manuscript
5. Map out LCO data and hardening data for inclusion in manuscript
6. PolyIC manuscript draft
7. Start Moorea 2023 paper (abstract, outline methods)

Analysis

1. RNAseq final analysis for Hawaii 2023
2. RNAseq alignment and assembly for Moorea 2023 data
3. E5 time series machine learning with eScience

Field work

1. Conduct fall/winter assessments at Baywater and Manchester

Funding

1. Write IOS grant with HP

Lab experiments

1. Guava Muse cell viability assay testing

Lab meeting goals

• Goal for next (11/3) lab meeting: Resubmit resazurin; complete HI2023 RNAseq remapping

Daily Log

October 28

• Resazurin paper
• Nat Comms review submission

October 27

• Resazurin paper
• Nat Comms review
• Pubathon
• Putnam lab writing meeting

October 22-24

• Working remotely, worked on resazurin paper, peer review, and RNAseq data analysis

October 21

• Resazurin paper revisions
• HI2023 RNA seq mapping
• Barnacle work session
• Taylor Shellfish EBV analysis

October 20

• Resazurin paper revisions
• Lab meeting
• Putnam lab writing meeting
• Planning oyster assessments

October 17

• Resazurin paper revisions
• Revive and Restore LOI

October 16

• 10K growth analysis
• WGCNA for E5 multi omics
• Resazurin manuscript
• Metabolomics writing session

October 15

• CoTS data analysis meeting
• Resazurin manuscript
• 10K outplant data management

October 9

• Goose Point data management
• eScience data meeting
• Resazurin manuscript

October 8

• Goose Point assessments
• E5 timeseries PCA analysis

October 7

• Hawaii 2023
• Resazurin manuscript

October 6

• Oyster data management
• Sequim field assessment

October 3

• Science hour
• Hawaii 2023 analysis
• Resazurin manuscript

October 2

• Maritime High School oyster collab meeting
• Metabolomics writing group with Yaamini
• Hawaii 2023 analysis
• Resazurin manuscript

October 1

• Barnacle working group troubleshooting
• Moorea 2023 RNA QC and NCBI upload
• MCR AIM abstract
• PolyIC image analysis