September 2025 Goals

September goals and daily notebook entries.

Goals

Writing and manuscripts

  1. Methods and results for Mcap2023 analysis
  2. Finish full draft of E5 physiology ms
  3. Submit resazurin manuscript
  4. Map out LCO data and hardening data for inclusion in manuscript
  5. PolyIC manuscript draft

Analysis

  1. Phenoplate and RLC analyses for Hawaii 2023
  2. Revisit respiration scripts for Hawaii 2023 and Moorea 2023 analysis using recent updates with oyster scripts
  3. QC report for RNAseq Moorea 2023 data
  4. E5 time series machine learning
  5. Taylor shellfish family screening analysis

Field work

  1. Field assessments at Manchester
  2. Analyze images from Sequim
  3. Analyze images from Goose Point
  4. Analyze images from Baywater
  5. Analyze images from Manchester

Funding

  1. Write IOS grant with HP
  2. Funding search - aquaculture

Presentations

  1. PCSGA conference and talk

Lab experiments

  1. Metabolomics processing for Moorea2023
  2. Set up Guava Cytek Muse instrument

Lab meeting goals

  • Goal for first October lab meeting: Revise resazurin manuscript post technical review

Daily Log

September 30

  • Hawaii 2023 results
  • Resazurin manuscript
  • Moorea 2023 sequence downloads and QC

September 29

  • Hawaii 2023 results
  • Resazurin manuscript
  • Moorea 2023 sequence downloads
  • Manchester data analysis
  • Catching up on emails

September 25

  • Hawaii 2023 respirometery and results
  • CRESST proposal
  • E5 phys manuscript

September 24

  • Hawaii 2023 respirometery and results
  • Taylor resazurin analysis
  • Manchester analysis
  • WSG funding meeting
  • CRESST proposal

September 23

  • Hawaii 2023 respirometery and results
  • Manchester assessments

September 22

  • Hawaii 2023 respirometry and results
  • CRESST proposal

September 19

  • Hawaii 2023 lipid analysis and results section
  • CRESST proposal

September 18

  • Hawaii 2023 lipid analysis
  • CRESST proposal

September 17

  • Meeting with VIMS - GitHub how to
  • Guava Muse instrument preparation and testing
  • Meeting with Madeline
  • CRESST proposal
  • Resazurin metrics

September 16

  • Resazurin analysis
  • E5 physiology manuscript
  • Resazurin manuscript

September 15

  • Resazurin analysis
  • E5 physiology manuscript
  • Resazurin manuscript
  • Conference follow ups

September 12

  • Oyster image analysis
  • Resazurin analysis
  • Conference follow ups

September 9-11

  • PCSGA conference

September 8

  • PCSGA talk
  • Ship out metabolomics samples
  • HPLC water

September 5

  • PCSGA talk
  • Taylor shellfish family screening analysis

September 3-4

  • Taylor Shellfish seed family screening
  • Metabolomics extractions

September 2

  • Preparing for Taylor Shellfish family screening tomorrow
  • Metabolomics processing
Written on September 29, 2025